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Considerations and consequences of allowing DNA sequence data as types of fungal taxa

  1. 1.
    SYSNO ASEP0490108
    Document TypeJ - Journal Article
    R&D Document TypeJournal Article
    Subsidiary JČlánek ve WOS
    TitleConsiderations and consequences of allowing DNA sequence data as types of fungal taxa
    Author(s) Zamora, J.C. (SE)
    Svensson, M. (SE)
    Kirschner, R. (TW)
    Olariaga, I. (ES)
    Ryman, S. (SE)
    Parra, L. A. (ES)
    Geml, J. (NL)
    Rosling, A. (SE)
    Adamčík, S. (SK)
    Ahti, T. (FI)
    Aime, M.C. (US)
    Ainsworth, A. M. (GB)
    Albert, L. (HU)
    Albertó, E. (AR)
    Altés García, A. (ES)
    Ageev, D. (RU)
    Agerer, R. (DE)
    Aguirre-Hudson, B. (GB)
    Ammirati, J. (US)
    Andersson, H. (DE)
    Angelini, C. (DO)
    Antonín, V. (CZ)
    Aoki, T. (JP)
    Aptroot, A. (NL)
    Argaud, D. (FR)
    Arguello Sosa, B. I. (MX)
    Aronsen, A. (NO)
    Arup, U. (SE)
    Asgari, B. (IR)
    Assyov, B. (BG)
    Atienza, V. (ES)
    Bandini, D. (DE)
    Baptista-Ferreira, J. L. (PT)
    Baral, H-O. (DE)
    Baroni, T. (US)
    Barreto, R.W. (BR)
    Beker, H. (BE)
    Bell, A. (NZ)
    Bellanger, J-M. (FR)
    Bellù, F. (IT)
    Bemmann, M. (DE)
    Bendiksby, M. (NO)
    Bendiksen, E. (NO)
    Bendiksen, K. (NO)
    Benedek, L. (HU)
    Bérešová-Guttová, A. (SK)
    Berger, F. (AT)
    Berndt, R. (CH)
    Bernicchia, A. (IT)
    Biketova, A. Yu. (HU)
    Bizio, E. (IT)
    Björk, C. (CA)
    Boekhout, T. (NL)
    Boertmann, D. (DK)
    Böhning, T. (DE)
    Boittin, F. (FR)
    Boluda, C. G. (CH)
    Boomsluiter, M. W. (NL)
    Borovička, Jan (GLU-S) RID, SAI, ORCID
    Brandrud, T. E. (NO)
    Braun, U. (DE)
    Brodo, I. (CA)
    Bulyonkova, T. (RU)
    Burdsall Jr., H. H. (US)
    Buyck, B. (FR)
    Burgaz, A.R. (ES)
    Calatayud, V. (ES)
    Callac, P. (FR)
    Campo, E. (IT)
    Candusso, M. (IT)
    Capoen, B. (FR)
    Carbó, J. (ES)
    Carbone, M. (IT)
    Castañeda-Ruiz, R. F. (CU)
    Castellano, M. (US)
    Chen, J. (TH)
    Clerc, P. (CH)
    Consiglio, G. (IT)
    Corriol, G. (FR)
    Courtecuisse, R. (FR)
    Crespo, A. (ES)
    Cripps, C. (US)
    Crous, P.W. (NL)
    da Silva, G. A. (BR)
    da Silva, M. (BR)
    Dam, M. (NL)
    Dam, N. (NL)
    Dämmrich, F. (NL)
    Das, K. (IN)
    Davies, L. (GB)
    De Crop, E. (BE)
    De Kesel, A. (BE)
    De Lange, R. (BE)
    De Madrignac Bonzi, B. (AR)
    dela Cruz, T. E. E. (AR)
    Delgat, L. (BE)
    Demoulin, V. (BE)
    Desjardin, D. E. (US)
    Diederich, P. (LU)
    Dima, B. (HU)
    Dios, M. M. (AR)
    Divakar, P.K. (ES)
    Douanla-Meli, C. (DE)
    Douglas, B. (GB)
    Drechsler-Santos, E. R. (BR)
    Dyer, P. S. (GB)
    Eberhardt, U. (DE)
    Ertz, D. (BE)
    Esteve-Raventós, F. (ES)
    Etayo Salazar, J. E. (ES)
    Evenson, V. (US)
    Eyssartier, G. (FR)
    Farkas, E. (HU)
    Favre, A. (FR)
    Fedosova, A.G. (RU)
    Filippa, M. (IT)
    Finy, P. (HU)
    Flakus, A. (PL)
    Fos, S. (ES)
    Fournier, J. (FR)
    Fraiture, P. F. (BE)
    Franchi, P. (IT)
    Franco Molano, A. E. (CO)
    Friebes, G. (AT)
    Author(s) Frisch, A. (NO)
    Fryday, A. (US)
    Furci, G. (CL)
    Galán Márquez, A. (ES)
    Garbelotto, M. (US)
    García-Martín, J. M. (ES)
    García Otálora, M. A. (CH)
    García Sánchez, D. (ES)
    Gardiennet, A. (FR)
    Garnica, S. (CL)
    Garrido Benavent, I. (ES)
    Gates, G. (AU)
    da Cruz Lima Gerlach, A. (CH)
    Ghobad-Nejhad, M. (IR)
    Gibertoni, T. B. (BR)
    Grebenc, T. (SI)
    Greilhuber, I. (AT)
    Grishkan, B. (IL)
    Groenewald, J.Z. (NL)
    Grube, M. (AT)
    Gruhn, G. (FR)
    Gueidan, C. (AU)
    Gulden, G. (NO)
    Gusmão, L. (BR)
    Hafellner, J. (AT)
    Hairaud, M. (FR)
    Halama, M. (PL)
    Hallenberg, N. (SE)
    Halling, R. E. (US)
    Hansen, K. (SE)
    Harder, Ch. B. (US)
    Heilmann-Clausen, J. (DK)
    Helleman, S. (NL)
    Henriot, A. (FR)
    Hernandez-Restrepo, M. (NL)
    Herve, R. (FR)
    Hobart, C. (GB)
    Hoffmeister, M. (DE)
    Høiland, K. (NO)
    Holec, J. (CZ)
    Holien, H. (NO)
    Hughes, K. (US)
    Hubka, V. (CZ)
    Huhtinen, S. (FI)
    Ivančević, B. (RS)
    Jagers, M. (NL)
    Jaklitsch, W. (AT)
    Jansen, A. E. (NL)
    Jayawardena, R. S. (TH)
    Jeppesen, T. S. (DK)
    Jeppson, M. (SE)
    Johnston, P. (NZ)
    Jørgensen, P. M. (NO)
    Kärnefelt, I. (SE)
    Kalinina, L. B. (RU)
    Kantvilas, G. (AU)
    Karadelev, M. (MK)
    Kasuya, T. (JP)
    Kautmanová, I. (SK)
    Kerrigan, R. W. (US)
    Kirchmair, M. (AT)
    Kiyashko, A. (RU)
    Knapp, D.G. (HU)
    Knudsen, H. (DK)
    Knudsen, K. (CZ)
    Knutsson, T. (SE)
    Kolařík, Miroslav (MBU-M) RID, ORCID
    Kõljalg, U. (EE)
    Košuthová, A. (SE)
    Koszka, A. (HU)
    Kotiranta, H. (FI)
    Kotkova, V. (RU)
    Koukol, O. (CZ)
    Kout, J. (CZ)
    Kovács, G. M. (HU)
    Kříž, M. (CZ)
    Kruys, Å. (SE)
    Kučera, V. (SK)
    Kudzma, L. (US)
    Kuhar, F. (AR)
    Kukwa, M. (PL)
    Kumar, T. K. A. (IN)
    Kunca, V. (SK)
    Kušan, I. (HR)
    Kuyper, T. W. (NL)
    Lado, C. (ES)
    Læssøe, T. (DK)
    Lainé, P. (FR)
    Langer, E. (DE)
    Larsson, E. (SE)
    Larsson, K.-H. (NO)
    Laursen, G. (US)
    Lechat, Ch. (FR)
    Lee, S. (SG)
    Lendemer, J. C. (US)
    Levin, L. (AR)
    Lindemann, U. (DE)
    Lindström, H. (SE)
    Liu, X. (CN)
    Llarena Hernandez, R. C. (MX)
    Llop, E. (ES)
    Locsmándi, C. (HU)
    Lodge, D. J. (US)
    Loizides, M. (CY)
    Lőkös, L. (HU)
    Luangsa-ard, J. (TH)
    Lüderitz, M. (DE)
    Lumbsch, T. (US)
    Lutz, M. (DE)
    Mahoney, D. (NZ)
    Malysheva, E. (RU)
    Malysheva, V. (RU)
    Manimohan, P. (IN)
    Marin-Felix, Y. (NL)
    Marques, G. (PT)
    Martínez-Gil, R. (FR)
    Marson, G. (LU)
    Mata, G. (MX)
    Matheny, P. B. (US)
    Mathiassen, G. H. (NO)
    Matočec, N. (HR)
    Mayrhofer, H. (AT)
    Mehrabi, M. (IR)
    Melo, I. (PT)
    Mešić, A. (HR)
    Methven, A.S. (US)
    Author(s) Miettinen, O. (FI)
    Millanes Romero, A. M. (ES)
    Miller, A. N. (US)
    Mitchell, J. K. (US)
    Moberg, R. (SE)
    Moreau, P.-A. (FR)
    Moreno, G. (ES)
    Morozova, O. (RU)
    Morte, A. (ES)
    Muggia, L. (IT)
    Muñoz González, G. (ES)
    Myllys, L. (FI)
    Nagy, I. (HU)
    Nagy, L.G. (HU)
    Neves, M. A. (BR)
    Niemelä, T. (FI)
    Nimis, P. L. (IT)
    Niveiro, N. (AR)
    Noordeloos, M. E. (NL)
    Nordin, A. (SE)
    Noumeur, S. R. (DZ)
    Novozhilov, Y. (RU)
    Nuytinck, J. (NL)
    Ohenoja, E. (FI)
    Oliveira Fiuza, P. (BR)
    Orange, A. (GB)
    Ordynets, A. (DE)
    Ortiz-Santana, B. (US)
    Pacheco, L. (MX)
    Pál-Fám, F. (HU)
    Palacio, M. (BR)
    Palice, Z. (CZ)
    Papp, V. (HU)
    Pärtel, K. (EE)
    Pawlowska, J. (PL)
    Paz, A. (ES)
    Peintner, U. (AT)
    Pennycook, S. (NZ)
    Pereira, O. L. (BR)
    Pérez Daniëls, P. (ES)
    Pérez-De-Gregorio Capella, M. A. (ES)
    Pérez del Amo, C. M. (ES)
    Pérez Gorjón, G. (ES)
    Pérez-Ortega, S. (ES)
    Pérez-Vargas, I. (ES)
    Perry, B. A. (US)
    Petersen, J. H. (DK)
    Petersen, R. H. (US)
    Pfister, D.H. (US)
    Phukhamsakda, C. (TH)
    Piątek, M. (PL)
    Piepenbring, M. (DE)
    Pino-Bodas, R. (ES)
    Pinzón Esquivel, J. P. (MX)
    Pirot, P. (BE)
    Popov, E.S. (RU)
    Popoff, O. (MX)
    Prieto Álvaro, M. (ES)
    Printzen, Ch. (DE)
    Psurtseva, N. (RU)
    Purahong, W. (DE)
    Quijada, L. (US)
    Rambold, G. (DE)
    Ramírez, N. A. (AR)
    Raja, H. (US)
    Raspé, O. (BE)
    Raymundo, T. (MX)
    Réblová, Martina (BU-J) RID, ORCID
    Rebriev, Y. A. (US)
    Reyes García, J. de D. (ES)
    Ribes Ripoll, M. Á. (ES)
    Richard, F. (FR)
    Richardson, M. J. (GB)
    Rico, V. J. (ES)
    Robledo, G. L. (AR)
    Rodrigues Barbosa, F. (BR)
    Rodriguez-Caycedo, C. (US)
    Rodriguez-Flakus, P. (PL)
    Ronikier, A. (PL)
    Rubio Casas, L. (PL)
    Rusevska, K. (MK)
    Saar, G. (DE)
    Saar, I. (EE)
    Salcedo, I. (ES)
    Salcedo Martínez, S. M. (MX)
    Salvador Montoya, C. A. (AR)
    Sánchez-Ramírez, S. (CA)
    Sandoval-Sierra, J. V. (US)
    Santamaria, S. (ES)
    Santana Monteiro, J. (BR)
    Schroers, H. J. (SI)
    Schulz, B. (DE)
    Schmidt-Stohn, G. (DE)
    Schumacher, G. (NO)
    Senn-Irlet, B. (CH)
    Ševčíková, H. (CZ)
    Shchepin, O. (RU)
    Shirouzu, T. (JP)
    Shiryaev, A. (RU)
    Siepe, K. (DE)
    Sir, E. B. (AR)
    Sohrabi, M. (IR)
    Soop, K. (SE)
    Spirin, V. (FI)
    Spribille, T. (CA)
    Stadler, M. (DE)
    Stalpers, J. (NL)
    Stenroos, S. (FI)
    Suija, A. (EE)
    Sunhede, S. (SE)
    Svantesson, S. (SE)
    Svensson, S. (SE)
    Svetasheva, T. Yu. (RU)
    Świerkosz, K. (PL)
    Tamm, H. (EE)
    Taskin, H. (TR)
    Taudière, A. (FR)
    Tedebrand, J.-O. (SE)
    Tena Lahoz, R. (ES)
    Temina, M. (IL)
    Thell, A. (SE)
    Thines, M. (DE)
    Thor, G. (SE)
    Thüs, H. (DE)
    Author(s) Tibell, L. (SE)
    Tibell, S. (SE)
    Timdal, E. (NO)
    Tkalčec, Z. (HR)
    Tønsberg, T. (NO)
    Trichies, G. (FR)
    Triebel, D. (DE)
    Tsurykau, A. (BY)
    Tulloss, R. E. (US)
    Tuovinen, V. (CA)
    Ulloa Sosa, M. (MX)
    Urcelay, C. (AR)
    Valade, F. (FR)
    Valenzuela Garza, R. (MX)
    van den Boom, P. (NL)
    Van Vooren, N. (FR)
    Vasco-Palacios, A. M. (CO)
    Vauras, J. (FI)
    Velasco Santos, J. M. (ES)
    Vellinga, E. (US)
    Verbeken, A. (BE)
    Vetlesen, P. (NO)
    Vizzini, A. (IT)
    Voglmayr, H. (AT)
    Volobuev, S. (RU)
    von Brackel, W. (DE)
    Voronina, E. (RU)
    Walther, G. (DE)
    Watling, R. (GB)
    Weber, E. (DE)
    Wedin, M. (SE)
    Weholt, Ø. (NO)
    Westberg, M. (SE)
    Yurchenko, E. (BY)
    Zehnálek, P. (CZ)
    Zhang, H. (CN)
    Zhurbenko, M. P. (RU)
    Ekman, S. (SE)
    Source TitleIMA Fungus. - : BioMed Central - ISSN 2210-6340
    Roč. 9, č. 1 (2018), s. 167-175
    Number of pages9 s.
    Publication formPrint - P
    Languageeng - English
    CountryUS - United States
    KeywordsIMC11 ; nomenclature ; speciation ; taxonomy ; typification ; voucherless fungi
    Subject RIVEF - Botanics
    OECD categoryMycology
    Subject RIV - cooperationInstitute of Botany - Botanics
    Institute of Microbiology - Microbiology, Virology
    Institutional supportGLU-S - RVO:67985831 ; MBU-M - RVO:61388971 ; BU-J - RVO:67985939
    UT WOS000438287000033
    EID SCOPUS85052309383
    DOI10.5598/imafungus.2018.09.01.10
    AnnotationNomenclatural type definitions are one of the most important concepts in biological nomenclature.Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificialagreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity).Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science,the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
    WorkplaceInstitute of Geology
    ContactJana Popelková, popelkova@gli.cas.cz, Sabina Janíčková, Tel.: 233 087 272
    Year of Publishing2019
Number of the records: 1  

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