Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)

0351529 - ÚBO 2012 RIV DE eng J - Journal Article
Demontis, D. - Czarnomska, S. D. - Hájková, Petra - Zemanová, Barbora - Bryja, Josef - Loeschcke, V. - Pertoldi, C.
Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra).
Mammalian Biology. Roč. 76, č. 5 (2011), s. 644-645. ISSN 1616-5047. E-ISSN 1618-1476
R&D Projects: GA AV ČR IAA600930609
Institutional research plan: CEZ:AV0Z60930519
Keywords : SNP chip * non-model species * Tatra chamois * Alpine chamois * hybridization
Subject RIV: EG - Zoology
Impact factor: 1.609, year: 2011

We present 151 SNPs (single nucleotide polymorphisms) identified in Tatra and Alpine chamois individuals after genotyping with the Bovine SNP50 Genotyping BeadChip (Illumina®). Population structure analysis based on the identified 151 SNPs as well as a subset of 48 SNPs were able to give information about geographic origin of each individual making the markers suitable for future evaluation and monitoring of the genetic status of the Tatra and Alpine chamois. Our study demonstrates how it is possible to quickly identify informative SNPs in non-model organisms based on a SNP marker panel created for a related domestic species.
Permanent Link: http://hdl.handle.net/11104/0191263