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Yeast Colony Counter
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SYSNO ASEP 0348217 Document Type L4 - Software R&D Document Type Software Title Yeast Colony Counter Author(s) Schier, Jan (UTIA-B) RID
Kovář, Bohumil (UTIA-B) RIDYear of issue 2010 Int.Code Yeast Colony Counter SResult web page, Location of the result Přírodovědecká fakulta UK Technical parameters DVD + doprovodný text Economic parameters 1500000 Owner Name ÚTIA AV ČR, v. v. i. Registration Number of the result owner 67985556 Use by another entity N - Využití výsledku jiným subjektem je možné bez nabytí licence Language eng - English Country CZ - Czech Republic Keywords Automated colony counting ; Image processing ; Fast radial transform ; Matlab ; Petri dish evaluation Subject RIV JC - Computer Hardware ; Software R&D Projects 1M0567 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) CEZ AV0Z10750506 - UTIA-B (2005-2011) Annotation The colony counter provides batch processing of a series of images of Petri dishes containing yeast colonies. It is aimed for a research laboratory using standard imaging equipment, where manual manipulation of the dishes is used, rather than specialized single-purpose camera system. It is assumed that dark background is used in the images. The tool evaluates two figures for the images: the relative coverage of the dish, and the number of colonies in the dish. It provides two modes of operation: automatic or semi-automatic. In the automatic mode, it processes the batch of images without any user intervention. In the semi-automatic mode, it first processes a dish and then it provides the user with an editor, where he can interactively correct the result of counting. The tool performs fully automatic thresholding of the image, dish localization and image segmentation. Two image formats are accepted at this moment: .jpg and .tiff. Other formats may be added on request. Workplace Institute of Information Theory and Automation Contact Markéta Votavová, votavova@utia.cas.cz, Tel.: 266 052 201. Year of Publishing 2011
Number of the records: 1