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Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by charmm explicit solvent molecular dynamics
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SYSNO ASEP 0310357 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by charmm explicit solvent molecular dynamics Title Konformační přechody volných bází v rNA "kissing" komplexech viru HIV-1 studované molekulově dynamickými simulacemi v explicitním solventu pomocí Charmmu Author(s) Sarzynska, J. (PL)
Réblová, Kamila (BFU-R)
Šponer, Jiří (BFU-R) RID, ORCID
Kulinski, T. (PL)Source Title Biopolymers - ISSN 0006-3525
Roč. 89, č. 9 (2008), s. 732-746Number of pages 15 s. Language eng - English Country US - United States Keywords molecular dynamics ; RNA ; force field Subject RIV BO - Biophysics R&D Projects LC06030 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) 1QS500040581 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) CEZ AV0Z50040507 - BFU-R (2005-2011) AV0Z50040702 - BFU-R (2007-2013) UT WOS 000257822000003 DOI https://doi.org/10.1002/bip.21001 Annotation Study of flanking bases in RNA kissing loop complexes using Charmm force field shows good agreement with experiments carried out by Amber and with X-ray crystalography. The study describes multiple conformations, which flanking bases may adopt on nanosecond time scale. Workplace Institute of Biophysics Contact Jana Poláková, polakova@ibp.cz, Tel.: 541 517 244 Year of Publishing 2009
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