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A-minor tertiary interactions in RNA kink-turns. Molecular dynamics and quantum chemical analysis
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SYSNO ASEP 0370696 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title A-minor tertiary interactions in RNA kink-turns. Molecular dynamics and quantum chemical analysis Author(s) Réblová, Kamila (BFU-R)
Šponer, Judit E. (BFU-R) RID, ORCID
Špačková, Naďa (BFU-R) RID
Beššeová, Ivana (BFU-R)
Šponer, Jiří (BFU-R) RID, ORCIDNumber of authors 5 Source Title Journal of Physical Chemistry B. - : American Chemical Society - ISSN 1520-6106
Roč. 115, č. 47 (2011), s. 13897-13910Number of pages 14 s. Language eng - English Country US - United States Keywords molecular dynamics ; RNA ; kink turn Subject RIV BO - Biophysics R&D Projects KJB400040901 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) IAA400040802 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) GD203/09/H046 GA ČR - Czech Science Foundation (CSF) GA203/09/1476 GA ČR - Czech Science Foundation (CSF) GAP208/10/2302 GA ČR - Czech Science Foundation (CSF) LC06030 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) CEZ AV0Z50040507 - BFU-R (2005-2011) AV0Z50040702 - BFU-R (2007-2013) UT WOS 000297195400013 DOI 10.1021/jp2065584 Annotation A-minor interactions are the most abundant tertiary contacts in large functional RNAs. We have studied A-minor interaction in kink turn structures using molecular dynamics and precise quantum chemical calculations. Main attention was paid to the substitutions and stability of receptor pair, which is involved in the A-minor interaction. Workplace Institute of Biophysics Contact Jana Poláková, polakova@ibp.cz, Tel.: 541 517 244 Year of Publishing 2012
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