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Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations

  1. 1.
    SYSNO0583260
    TitleSimple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations
    Author(s) Mlýnský, Vojtech (BFU-R) ORCID
    Kührová, Petra (BFU-R) [DSDNA] ORCID
    Stadlbauer, Petr (BFU-R) ORCID
    Krepl, Miroslav (BFU-R) ORCID
    Otyepka, M. (CZ)
    Banáš, Pavel (BFU-R) RID, ORCID
    Šponer, Jiří (BFU-R) RID, ORCID
    Corespondence/seniorMlýnský, Vojtech - Korespondující autor
    Banáš, Pavel - Korespondující autor
    Šponer, Jiří - Korespondující autor
    Source Title Journal of Chemical Theory and Computation . Roč. 19, č. 22 (2023), s. 8423-8433. - : American Chemical Society
    Document TypeČlánek v odborném periodiku
    Grant GA23-05639S GA ČR - Czech Science Foundation (CSF), CZ - Czech Republic
    Institutional supportBFU-R - RVO:68081707
    Languageeng
    CountryUS
    Keywords molecular-dynamics simulations * replica exchange * parameters * tetraloops * uucg * nmr * resolution
    Cooperating institutions Czech Adv Technol & Res Inst CATRIN, Olomouc 77900, Czech Republic
    VSB Tech Univ Ostrava, IT4Innovations, Ostrava 70800, Czech Republic
    URLhttps://pubs.acs.org/doi/10.1021/acs.jctc.3c00990
    Permanent Linkhttps://hdl.handle.net/11104/0351262
     
Number of the records: 1  

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