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The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459
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SYSNO ASEP 0561992 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459 Author(s) Gutiérrez-Larruscain, David (UEB-Q) ORCID
Krüger, Manuela (UEB-Q) ORCID
Abeyawardana, Oushadee A.J. (UEB-Q) ORCID
Belz, Claudia (UEB-Q) ORCID
Dobrev, Petre (UEB-Q) RID, ORCID
Vaňková, Radomíra (UEB-Q) RID, ORCID
Eliášová, Kateřina (UEB-Q) RID, ORCID
Vondráková, Zuzana (UEB-Q) RID, ORCID
Juříček, Miloslav (UEB-Q) RID, ORCID
Štorchová, Helena (UEB-Q) RID, ORCIDNumber of authors 10 Article number 108333 Source Title Data in Brief. - : Elsevier - ISSN 2352-3409
Roč. 43, AUG (2022)Number of pages 9 s. Language eng - English Country DE - Germany Keywords Flowering ; Gene expression ; Oxidative stress ; Photoperiod ; Phytohormones OECD category Plant sciences, botany R&D Projects GA19-01639S GA ČR - Czech Science Foundation (CSF) EF16_019/0000738 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) Method of publishing Open access Institutional support UEB-Q - RVO:61389030 UT WOS 000832310400032 EID SCOPUS 85131422472 DOI 10.1016/j.dib.2022.108333 Annotation The transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Arabidopsis thaliana and in some crops, much less is known about the other angiosperms. We performed the detailed transcriptomic survey of the course of floral induction in seedlings of Chenopodium ficifolium accession 459, a close relative of the important crop Chenopodium quinoa. It flowers earlier under short days (6 hours light) than under long days (18 hours light). Plants were sampled at the age 14, 18, 21 and 24 days in the morning and afternoon, both at long and short day, for RNA-Sequencing, and also for phytohormone analyses. We employed Illumina NovaSeq6000 platform to generate raw reads, which were cleaned and mapped against the de novo constructed transcriptome of C. ficifolium. The global gene expression levels between long and short days were pairwise compared at each time points. We identified differentially expressed genes associated with floral induction in C. ficifolium 459. Particular attention was paid to the genes responsible for phytohormone metabolism and signaling. The datasets produced by this project contributed to better understanding of the regulation of growth and development in the genus Chenopodium. Workplace Institute of Experimental Botany Contact David Klier, knihovna@ueb.cas.cz, Tel.: 220 390 469 Year of Publishing 2023 Electronic address https://doi.org/10.1016/j.dib.2022.108333
Number of the records: 1