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Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations
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SYSNO ASEP 0322991 Document Type J - Journal Article R&D Document Type Journal Article Subsidiary J Článek ve WOS Title Trans Hoogsteen/sugar edge base pairing in RNA. Structures, energies, and stabilities from quantum chemical calculations Title Trans Hoogsteen/sugar edge párování v RNA. Struktura, energie a stabilita z kvantově chemických výpočtů Author(s) Mládek, Arnošt (BFU-R)
Sharma, P. (IN)
Mitra, A. (IN)
Bhattacharyya, D. (IN)
Šponer, Jiří (BFU-R) RID, ORCID
Šponer, Judit E. (BFU-R) RID, ORCIDSource Title Journal of Physical Chemistry B. - : American Chemical Society - ISSN 1520-6106
Roč. 113, č. 6 (2009), s. 1743-1755Number of pages 13 s. Language eng - English Country US - United States Keywords quantum chemical calculations ; base pairing ; RNA Subject RIV BO - Biophysics R&D Projects IAA400550701 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) IAA400040802 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) 1QS500040581 GA AV ČR - Academy of Sciences of the Czech Republic (AV ČR) LC06030 GA MŠMT - Ministry of Education, Youth and Sports (MEYS) CEZ AV0Z50040507 - BFU-R (2005-2011) AV0Z50040702 - BFU-R (2007-2013) AV0Z40550506 - UOCHB-X (2005-2011) UT WOS 000263134500025 DOI 10.1021/jp808357m Annotation Trans Hoogsteen/sugar edge (H/SE) RNA base pairs form one of the six families of RNA base pairs that utilize the 2'-hydroxyl group of ribose for base pairing and play key roles in stabilizing folded RNA molecules. Here we provide a detailed quantum chemical characterization of intrinsic structures and interaction energies of this base pair family, along with the evaluation of solvent screening effects by a continuum solvent approach. Workplace Institute of Biophysics Contact Jana Poláková, polakova@ibp.cz, Tel.: 541 517 244 Year of Publishing 2009
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