Number of the records: 1
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting
- 1.0539921 - BFÚ 2021 RIV GB eng J - Journal Article
Lexa, Matej - Jedlička, Pavel - Vanat, I. - Červeňanský, Michal - Kejnovský, Eduard
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinformatics. Roč. 36, č. 20 (2020), s. 4991-4999. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA18-00258S
Institutional support: RVO:68081707
Keywords : transposable elements * visualization * annotation * identification * paleontology
OECD category: Biochemical research methods
Impact factor: 6.937, year: 2020
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/36/20/4991/5871348
Motivation: Transposable elements (TEs) in eukaryotes often get inserted into one another, forming sequences that become a complex mixture of full-length elements and their fragments. The reconstruction of full-length elements and the order in which they have been inserted is important for genome and transposon evolution studies. However, the accumulation of mutations and genome rearrangements over evolutionary time makes this process error-prone and decreases the efficiency of software aiming to recover all nested full-length TEs.
Permanent Link: http://hdl.handle.net/11104/0317612
Number of the records: 1