Aromatic amino acids and their relevance in the specificity of the PH domain

0486692 - ÚMG 2018 RIV GB eng J - Journal Article
Morales, J. - Sobol, Margaryta - Rodriguez-Zapata, L.C. - Hozák, Pavel - Castano, E.
Aromatic amino acids and their relevance in the specificity of the PH domain.
Journal of Molecular Recognition. Roč. 30, č. 12 (2017), č. článku e2649. ISSN 0952-3499. E-ISSN 1099-1352
R&D Projects: GA TA ČR(CZ) TE01020118; GA ČR GAP305/11/2232; GA ČR(CZ) GA16-03346S; GA ČR GA15-08738S; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:68378050
Keywords : PH domain * Phosphatidic acid * Phosphoinositides
OECD category: Biochemistry and molecular biology
Impact factor: 1.868, year: 2017

Phosphoinositides are phosphatidylinositol derived, well known to be second messengers in various cell signaling pathways as well as in processes such as cell differentiation, cellular stress response, gene transcription, and chromatin remodeling. The pleckstrin homology domain of phospholipase C-delta 1 is responsible for recognizing and binding to PI(4,5) P-2 and for this reason has been widely used to study this phosphoinositide as a biosensor when it is conjugated to a fluorescent tag. In this work, we modified the primary structure of pleckstrin homology domain by site-specific mutagenesis to change the specificity for phosphoinositides. We obtained 3 mutants: K30A, W36F, and W36Y with different specificity to phosphoinositides. Mutant domain K30A recognized PI(4,5) P-2, PI(3,4,5) P-3, phosphatidic acid (PA), and weakly PI(3,5) P-2. Mutant domain W36F recognized all the phosphoinositides studied and the PA. Finally, mutant domain W36Y seemed to interact with PA and all the other phosphoinositides studied, except PI(3) P. The changes in recognition argue against a simple charge and nonpolar region model for these interactions and more in favor of a specific docking region with a specific recognition site. We conducted in silico modeling that explains the mechanisms behind the observed changes and showed that aromatic amino acids appear to play more important role, than previously thought, in the specificity of phospholipids' binding domains.
Permanent Link: http://hdl.handle.net/11104/0281440