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DNATCO: assignment of DNA conformers at dnatco.org
- 1.0465942 - BTÚ 2017 RIV GB eng J - Journal Article
Černý, Jiří - Božíková, Paulina - Schneider, Bohdan
DNATCO: assignment of DNA conformers at dnatco.org.
Nucleic Acids Research. Roč. 44, č. W1 (2016), W284-W287. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : conformations
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 10.162, year: 2016
The web service DNATCO (dnatco.org) classifies local conformations of DNA molecules beyond their traditional sorting to A, B and Z DNA forms. DNATCO provides an interface to robust algorithms assigning conformation classes called ntC to dinucleotides extracted from DNA-containing structures uploaded in PDB format version 3.1 or above. The assigned dinucleotide ntC classes are further grouped into DNA structural alphabet ntA, to the best of our knowledge the first DNA structural alphabet. The results are presented at two levels: in the form of user friendly visualization and analysis of the assignment, and in the form of a downloadable, more detailed table for further analysis offline. The website is free and open to all users and there is no login requirement.
Permanent Link: http://hdl.handle.net/11104/0264406
Number of the records: 1