Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca

0454886 - MBÚ 2016 RIV GB eng J - Journal Article
Zeng, Yonghui - Selyanin, Vadim - Lukeš, Martin - Dean, Jason Lawrence - Kaftan, David - Feng, F. - Koblížek, Michal
Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca.
International Journal of Systematic and Evolutionary Microbiology. Roč. 65, AUG 2015 (2015), s. 2410-2419. ISSN 1466-5026. E-ISSN 1466-5034
R&D Projects: GA ČR GBP501/12/G055; GA MŠMT EE2.3.30.0059
Institutional support: RVO:61388971
Keywords : SPECIES DEFINITION * GENOMIC INSIGHTS * PROKARYOTES
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.439, year: 2015

A red-pigmented, bacteriochlorophyll (BChl) a-producing strain, AP64(T), was isolated previously from the freshwater Swan Lake located in the western Gobi Desert. Based on its 16S rRNA gene sequence identity (96.1 %) to the type strain Gemmatimonas aurantiaca T-27(T), the new isolate was tentatively classified as a member of the bacterial phylum Gemmatimonadetes. Here, we report its formal description and polyphasic characterization. Strain AP64(T) grew best on agar media under 9.8-15.2 % atmospheric oxygen. The cells were rods, dividing by symmetrical or asymmetrical binary fission. Budding structures were also observed. Its genomic DNA G+C content was 64.4 % (from the draft genome sequence). Phylogenetic analysis based on the 16S rRNA gene sequence clearly separated AP64(T) from related species. Its genotypic differentiation from phylogenetically close relatives was further supported by performing in silico DNA DNA hybridization and calculating average nucleotide identity, whereas the high percentage (67.3 0/o) of shared conserved proteins between strain AP64(T) and Gemmatimonas aurantiaca 1-27(T) supports the classification of the two strains into the same genus. Strain AP64(T) contained C-16 : 1, C-14 : 1 and C-18 (:) (1)omega 9c as predominant fatty acids. The main respiratory quinone was menaquinone 8 (MK-8). The most distinctive feature of strain AP64(T) was the presence of fully functional purple bacterial photosynthetic reaction centres. The main CO2-fixation pathways were absent. Strain AP64(T) was capable of growth and BChl production in constant darkness. Thus, strain AP64(T) is a facultatively photoheterotrophic organism. It represents a novel species of the genus Gemmatimonas, for which the name Gemmatimonas phototrophica sp. nov. is proposed. The type strain is AP64(T) (=DSM 29774(T)=MCCC 1K00454(T)). Emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca are also provided.
Permanent Link: http://hdl.handle.net/11104/0255550