Utility of the DNA barcoding gene fragment for parasitic wasp phylogeny (Hymenoptera: Ichneumonoidea): data release and new measure of taxonomic congruence

0378001 - BC 2013 RIV GB eng J - Journal Article
Quicke, D. L. J. - Smith, M. A. - Janzen, D. H. - Hallwachs, W. - Fernandez-Triana, J. - Laurenne, N. M. - Zaldívar-Riverón, A. - Shaw, M. R. - Broad, G. R. - Klopfstein, S. - Shaw, S. R. - Hrček, Jan - Hebert, P. D. N. - Miller, S. E. - Rodriguez, J. J. - Whitfield, J. B. - Sharkey, M. J. - Sharanowski, B. J. - Jussila, R. - Gauld, I. D. - Chesters, D. - Vogler, A. P.
Utility of the DNA barcoding gene fragment for parasitic wasp phylogeny (Hymenoptera: Ichneumonoidea): data release and new measure of taxonomic congruence.
Molecular Ecology Resources. Roč. 12, č. 4 (2012), s. 676-685. ISSN 1755-098X. E-ISSN 1755-0998
R&D Projects: GA ČR GA206/09/0115
Grant - others:National Science Foundation(US) BSR 9024770; National Science Foundation(US) DEB 9306296; National Science Foundation(US) DEB 9400829; National Science Foundation(US) DEB 9705072; National Science Foundation(US) DEB 0072730; National Science Foundation(US) DEB 0515699; National Science Foundation(US) DEB 0841885; National Science Foundation(US) DEB 0542864; NERC grant(GB) NDC519583; NERC Case studentship(GB) NER/S/A/2006/14013
Institutional research plan: CEZ:AV0Z50070508
Institutional support: RVO:60077344
Keywords : Braconidae * cytochrome oxidase 1 * Ichneumonidae
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 7.432, year: 2012
http://onlinelibrary.wiley.com/doi/10.1111/j.1755-0998.2012.03143.x/pdf

The enormous cytochrome oxidase subunit I (COI) sequence database being assembled from the various DNA barcoding projects constitutes an almost unprecedented amount of data for molecular systematics, in addition to its role in species identification and discovery. We have assembled a data set for the hyperdiverse, cosmopolitan parasitic wasp superfamily Ichneumonoidea. Barcoding data were assembled for 4168 putative species-level terminals, representing 671 genera and all but ten of the currently recognized subfamilies. We show that when subjected to phylogenetic analysis using both maximum likelihood and parsimony, there is a broad correlation between taxonomic congruence and number of included sequences. We additionally present a new measure of taxonomic congruence, the Simpson dominance index, which gives greater weight to morphologically recognized taxonomic groups (subfamilies) recovered with most representatives in one or a few contiguous groups or sub clusters.
Permanent Link: http://hdl.handle.net/11104/0209996