0533584 - ÚBO
DATA Scientific data 2020
Bryja, JosefGenomické ddRAD datasety etiopských Lophuromys.
[Genomic ddRAD datasets of Ethiopian Lophuromys.]
Description: (1) Three alternative ddRAD datasets of concatenated SNPs used in ML phylogenetic analyses: (i) Complete data of 71341 SNPs/loci. (ii) Reduced data of 13 184 SNPs/loci present at least in 30% of individuals. (iii) Reduced data of 699 SNPs/loci present at least in 90% of individuals.
(2) Alternative ddRAD datasets used for sNMF analysis (in two formats - geno and nexus): (i) 13 586 loci present in 30% of genotyped ingroup individuals. (ii) 787 loci present in 90% of genotyped ingroup individuals.
The data are used and analysed in Komarova et al., submitted to Molecular Ecology.
[(1) Three alternative ddRAD datasets of concatenated SNPs used in ML phylogenetic analyses: (i) Complete data of 71341 SNPs/loci. (ii) Reduced data of 13 184 SNPs/loci present at least in 30% of individuals. (iii) Reduced data of 699 SNPs/loci present at least in 90% of individuals.
(2) Alternative ddRAD datasets used for sNMF analysis (in two formats - geno and nexus): (i) 13 586 loci present in 30% of genotyped ingroup individuals. (ii) 787 loci present in 90% of genotyped ingroup individuals.
The data are used and analysed in Komarova et al., submitted to Molecular Ecology.]
Keywords : ddRAD * Lophuromys * Ethiopia
OECD category: Zoology
DOI: https://doi.org/10.57680/asep.0533584Handle: http://hdl.handle.net/11104/0311955
Depositor: Bryja, Josef
Date of release: 28.10.2020
