Technical Note
An iBody-based lateral flow assay for semi-quantitative determination of His-tagged protein concentration

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Abstract

The polyhistidine tag (His-tag) is one of the most commonly used epitope tags in protein engineering. While His-tagged proteins can be detected reliably using immunological methods such as ELISA and Western blot, these methods are costly and time-intensive, necessitating more facile solutions for preliminary qualitative determination and concentration estimation.

To this end, we present a rapid test strip assay based on iBody antibody mimetics that target the His-tag. We compare this strategy to commercial antibody-based assays and discuss the advantages and caveats of lateral flow assay design. Our test strip detected a panel of His-tagged proteins with different tag attachment strategies with a visual detection limit of 1 μM and densitometric detection limit of 0.5 μM. Due to its chemical nature, the presented assay exhibits wide reagent compatibility in comparison to antibody-based assays.

Introduction

Since its introduction in 1988 (Hochuli et al., 1988), the polyhistidine tag (His-tag) has become one of the most commonly used epitope tags for production and purification of recombinant proteins. His-tag commonly consists of six to ten consecutive histidine residues, which can be fused to accessible regions of proteins to facilitate their purification and detection. Polyhistidine peptides bind bivalent metal ions, and the most commonly used for protein purification are Ni2+ and Co2+ immobilized with chelation agents such as nitrilotriacetic acid (NTA, Hochuli et al., 1987) and its multivalent derivatives (Lata et al., 2005). In our previous work, we demonstrated that an iBody polymer conjugated with TrisNTA-targeting ligands can be used to detect His-tagged proteins in complex biological matrices (Sacha et al., 2016).

Due to the common use of this tag in recombinant protein expression, various techniques have been employed for detection and quantitation of His-tagged proteins. In addition to accurate but time- and equipment-intensive methods such as ELISA and Western blot, there is a need for rapid methods for preliminary identification and relative quantitation of His-tagged proteins. To address this need, we present a rapid lateral flow assay for detection of His-tagged proteins based on polymer antibody-mimetics.

Section snippets

Reagents

Polyvinyl alcohol (PVA, 8148940101) was purchased from Merck Millipore (Burlington, MA, USA). Tween-20 (20605) and PEG-8000 (19966) were purchased from Affymetrix (Santa Clara, CA, USA). The other reagents used in this work were purchased from Sigma (St. Louis, MO, USA). The proteins used for assay validation are listed in Table 1.

Gold nanoparticle stock solution was kindly supplied by Jitka Neburková. Colloidal gold was prepared according to the procedure described by (Frens, 1973). Briefly,

Assay optimization

The first step in assay design was to determine the optimal pH for iBody-colloid conjugation. The performance of the conjugate was verified in a half-strip format (direct application of conjugate onto a test strip lacking a sample pad). Conjugate performance was consistent across the pH range 6.5–9.1, with a carbonate buffer system at pH 8.6 being only marginally better than other conditions tested. The polymer concentration in the conjugation reaction was also optimized using the half-strip

Conclusion

In the present study, a lateral flow assay based on iBody antibody mimetics was developed, optimized, and shown to have sensitivity suitable for preliminary protein concentration estimation and qualitative testing. The test is able to detect multiple His-tagged proteins with different tag attachment strategies with a visual detection limit of 1 μM and densitometric detection limit of 0.5 μM.

Our test was compared with two commercially available antibody-based assays in terms of reagent

Acknowledgment

The authors would like to thank Jitka Neburková for preparation of stock gold nanoparticle solution, Jakub Staníček for supplying recombinant His-tagged proteins for testing, as well as Vladimír Šubr and Libor Kostka for preparation of anti-His-tag polymer conjugate. The study was supported by the Czech Science Foundation (No. 19-10280S), by Ministry of Industry and Trade of the Czech Republic (No. FV10490) and by the European Regional Development Fund; OP RDE (No.

Declaration of Competing Interest

The authors declare no competing financial interest.

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