Issue 14, 2022

Acid–base properties of an antivirally active acyclic nucleoside phosphonate: (S)-9-[3-hydroxy-2-(phosphonomethoxy)propyl]adenine (HPMPA)

Abstract

HPMPA is an acyclic nucleoside phosphonate analogue of AMP which displays antiviral properties. Therefore, its acid–base behavior as well as that of related compounds like PMEA, 9-[2-(phosphonomethoxy)ethyl]adenine, are for many reasons (e.g., binding to enzymes, coordination of metal ions) of general interest. HPMPA can accept two protons at the phosphonate and two more at the adenine residue, but not all acidity constants are accessible by potentiometric pH titrations. Therefore, we measured the chemical shifts of the nine non-exchangeable HPMPA protons by 1H NMR in D2O in dependence on pD in the range from 1 to 12. The corresponding results allowed identifying the protonation sites and, transferred to aqueous solution, they gave also the acidity constants. The most basic site is the phosphonate group followed by N1 of adenine. The pKa values increase from ca. −0.27 [–N7(H)+] via 1.27 [–PO(OH)2] and 4.23 [–N1(H)+] to 6.86 [–PO(OH)]. In the fully protonated species charge repulsion exists between N1(H)+ and N7(H)+; therefore, the affinity of N7 for H+ is not correctly reflected by the measured acidity constant (ca. −0.27). Needed is the intrinsic micro acidity constant which reflects the H+ affinity of N7 under conditions where N1 is unprotonated; we abbreviate this species as +H·N7(HPMPA)N1. The corresponding microconstant is estimated to be pkN7–N1H·N7–N1Image ID:d2nj00543c-t1.gif 3.5; the minor species +H·N7(HPMPA)N1 occurs with an estimated formation degree between about 5 to 20%. The basicity of the adenine nitrogens decreases in the order N1 > N7 > N3.

Graphical abstract: Acid–base properties of an antivirally active acyclic nucleoside phosphonate: (S)-9-[3-hydroxy-2-(phosphonomethoxy)propyl]adenine (HPMPA)

Article information

Article type
Paper
Submitted
01 Feb 2022
Accepted
18 Feb 2022
First published
16 Mar 2022
This article is Open Access
Creative Commons BY license

New J. Chem., 2022,46, 6484-6493

Acid–base properties of an antivirally active acyclic nucleoside phosphonate: (S)-9-[3-hydroxy-2-(phosphonomethoxy)propyl]adenine (HPMPA)

C. A. Blindauer, A. Holý, A. Sigel, B. P. Operschall, R. Griesser and H. Sigel, New J. Chem., 2022, 46, 6484 DOI: 10.1039/D2NJ00543C

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